DNA replication and Genome Integrity Maintenance.
The main interest of our lab deals with understanding the molecular mechanisms that protect Genome Integrity, with a strong focus on DNA replication. Problems occurring during replication are an important cause of genomic instability and have been related to human disease including cancer.
DNA replication is the fascinating process allowing living organisms to grow and propagate by rapidly generating virtually identical copies of their genetic material. However, replication has a dark side for the cell as it is carried out in specialized structures (i.e. replication forks) that are intrinsically fragile and prone to engage in unscheduled recombination events. Replication fork progression is hampered when DNA synthesis is inhibited or when forks interfere with other chromosome metabolic processes (e.g. gene transcription or DNA repair). In situations replication forks tend to collapse and generate DNA breaks. Aberrant repair of collapsed forks, particularly in the context of a defective cellular response to DNA damage, give rise to mutations and chromosomal rearrangements, hallmarks of malignant transformation.
The main goal of our team is understanding the mechanisms that stabilize replication forks facing natural barriers to their progression (such as highly transcribed genes) and are mediated by specialized molecular machines as DNA topoisomerases and helicases. We also focus in understanding how cells coordinate stalled replication fork signalling, through the DNA damage checkpoint response, with the mechanisms in charge of maintaining their integrity for DNA synthesis and that process them to prevent the accumulation of chromosome abnormalities.
We study these fundamental mechanisms by a multidisciplinary approach combining genetic approaches, which allow dissecting the function of key factors involved in these processes, with genomic and molecular biology methodologies enabling a detailed analysis of replication dynamics.
Our group is very interested in training young scientists by providing a competitive international environment to carry out conceptually and technically innovative projects. If you are interested in joining the group send us a current CV and motivation letter.
The group carried out the European Project CHECKPOINT-INACT. Information related to the project can be found here.
Ferrari E, Bruhn C, Peretti M, Cassani C, Carotenuto WV, Elgendy M, Shubassi G, Lucca C, Bermejo R, Varasi M, Minucci S, Longhese MP, Foiani M. . PP2A Controls Genome Integrity by Integrating Nutrient-Sensing and Metabolic Pathways with the DNA Damage Response. Mol Cell. 2017 Jul 20;67(2):266-281
Frattini C, Villa-Hernández S, Pellicanò G, Jossen R, Katou Y, Shirahige K, Bermejo R. . Cohesin Ubiquitylation and Mobilization Facilitate Stalled Replication Fork Dynamics. Mol Cell. Nov 16;68(4):758-772.e4
Colosio A, Frattini C, Pellicanò G, Villa-Hernández S and Bermejo R. . Nucleolytic processing of aberrant replication intermediates by an Exo1-Dna2-Sae2 axis counteracts fork collapse-driven chromosome instability. Nucleic Acids Res. 2016 Dec 15;44(22):10676-10690.
Gonzalez-Huici V., Szakal B., Urulangodi M., Psakhye I., Castellucci F., Menolfi D., Rajakumara E., Fumasoni M., Bermejo R., Jentsch S., Branzei D. . DNA bending facilitates the error-free DNA damage tolerance pathway and upholds genome integrity. EMBO J 33: 327-40.
Jossen R, Bermejo R. . The DNA damage checkpoint response to replication stress: A Game of Forks. Front Genet. 4: 26.
Bermejo R, Kumar A, Foiani M. . Preserving the genome by regulating chromatin association with the nuclear envelope. Trends Cell Biol. 2012 Sep;22(9):465-73.
Bock LJ, Pagliuca C, Kobayashi N, Grove RA, Oku Y, Shrestha K, Alfieri C, Golfieri C, Oldani A, Dal Maschio M, Bermejo R, Hazbun TR, Tanaka TU, De Wulf P. . Cnn1 inhibits the interactions between the KMN complexes of the yeast kinetochore. Nat Cell Biol. 2012 May 6;14(6):614-24.
Bermejo R, Lai MS, Foiani M. . Preventing replication stress to maintain genome stability: resolving conflicts between replication and transcription. Mol Cell. 2012 Mar 30;45(6):710-8.
Ray Chaudhuri A, Hashimoto Y, Herrador R, Neelsen KJ, Fachinetti D, Bermejo R, Cocito A, Costanzo V, Lopes M. . Topoisomerase I poisoning results in PARP-mediated replication fork reversal. Nat Struct Mol Biol. 2012 Mar 4;19(4):417-23.
SPANISH MINISTRY OF ECONOMY AND COMPETITIVENESS: BFU2014-52529-R
SPANISH MINISTRY OF SCIENCE AND INNOVATION: BFU2011-24909
EUROPEAN UNION: FP7-PEOPLE-CIG1386